Table 1

The genes of the (+)-training set (without orthologs). Marked with asterisks are those included in the "seed" set.
No
 Gene name
 Accessin no. And LocusLinkID
 Experimental evidence
 Additional information
 Participation in anti-Pseudomonas response
1
 Monocyte chemoattractant protein-1, MCP-1*
 EMBL: D26087
 Microarray [66], other experiments [20,21,38]
 Is well know as expressed in antibacterial response
 100%
2
 β-defensin*
 LocusLinkID: 1673
 [15,18,19,39,40]
 Is well known as expressed in antibacterial response; important target gene in innate immunity
 100%
3
 Interferon regulatory factor 1, IRF-1*
 LocusLinkID: 3659
 Microarray [66]
 Known to be expressed in epithelial cells
 probable
4
 Equilibrate nucleoside transporter 1, SLC29a1
 LocusLinkID: 2030
 Microarray [66]

5
 Proteinkinase C η type, PKCη*
 LocusLinkID: 5583
 Microarray [66] TRANSPATH®
 Important link in Ca2+-connected pathways
 probable
6
 Folypolyglutamate synthase, FPGS
 Ensembl : ENSG00000136877
 Microarray [66]

7
 RhoB*
 LocusLinkID: 388
 Microarray [66]
 is induced as part of the immediate early response in different systems
 probable
8
 Origin recognition complex subunit 2, hORC2L
 LocusLinkID: 4999
 Microarray [66]

9
 Transcription factor TEL2*
 LocusLinkID: 51513
 Microarray [66]
 Transcription factor
 probable
10
 Interleukin 8, IL8*
 EPD: EP73083LocusLinkID: 3576
 [10,11,26,44,45]
 Is well know as expressed in antibacterial response
 100%
11
 Transcription factor ELF3*
 LocusLinkID: 1999
 Microarray [66]
 Transcription factor
 probable
12
 Mucin 1(mouse gene), MUC1*
 RefSeq: NM_013605
 [17,27,28,36,47]
 Different mucins are shown as expressed in antibacterial response
 100%
13
 NF-kappaB inhibitor alpha, IkBa*
 LocusLinkID: 4792 EPD: EP73215
 Microarray [66]
 NF-kB inhibitor, the main link in NF-kB-targeting pathways
 Very high
14
 Tissue Factor Pathway Inhibitor 2, TFPI
 LocusLinkID: 7980 EPD: EP73430
 Microarray [66]

15
 Urokinase-type plasminogen activator precursor, PLAU
 LocusLinkID: 5328
 Microarray [66]

16
 c-jun*
Microarray [66]
 Transcription factor
 probable
17
 Cytochrom P450 dioxin-inducible*
 LocusLinkID: 1545
 Microarray [66]
 Stress-inducible
 probable
18
 Dyphtheria toxin resistance protein, DPH2L2
 EPD: EP74285
 Microarray [66]

Shelest and Wingender Theoretical Biology and Medical Modelling 2005 2:2   doi:10.1186/1742-4682-2-2