A method for the generation of standardized qualitative dynamical systems of regulatory networks

doi:10.1186/1742-4682-3-13

Theoretical Biology and Medical Modelling

Volume 3

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A method for the generation of standardized qualitative dynamical systems of regulatory networks

Luis Mendoza and Ioannis Xenarios

Serono Pharmaceutical Research Institute, 14, Chemin des Aulx, 1228 Plan-les-Ouates, Geneva, Switzerland

author email corresponding author email

Theoretical Biology and Medical Modelling 2006, 3:13doi:10.1186/1742-4682-3-13


Published:	16 March 2006

Additional files

Additional File 1:

The file contains the set of differential equations describing the continuous version of the Th model. It is a plain text file formatted for running simulations using the GNU Octave package http://www.octave.org webcite

Format: TXT Size: KB Download file

Additional File 2:

The file is a java program that implements the methodology described in this paper; it requires a working installation of GNU Octave http://www.octave.org webcite. The program takes as input a plain text file containing the topology of the network to analyze, with the following format: MoleculeA -> MoleculeB MoleculeB -| MoleculeA The output of the program is a stream of plain text formatted for GNU Octave.

Format: JAR Size: 33KB Download file