Table 2

Genetic model. Boolean (logical) functions used in the genetic model depicted Figure 1. For APC, SMAD and RAS, Boolean values are set to 0, 0 and 1 respectively when genes are mutated.

Boolean model

Node
Boolean updating function

APCt

APCt+1 = 0 if mutated
βcatt
βcatt+1 = ¬APCt
cmyct
cmyct+1 = RASt βcatt ∧ ¬SMADt
p27t
p27t+1 = SMADt ∨ ¬cmyct
p21t
p21t+1 = p53t
Baxt
Baxt+1 = p53t
SMADt

SMADt+1 = 0 if mutated
RASt

RASt+1 = 1 if mutated
p53t

p53t+1 = 0 if mutated
CycCDKt
CycCDKt+1 = ¬p21t ∧ ¬p27t
Rbt
Rbt+1 = ¬CycCDKt

Ribba et al. Theoretical Biology and Medical Modelling 2006 3:7   doi:10.1186/1742-4682-3-7