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Errors in reproduced metabolite concentrations obtained by using estimated enzyme reaction rates |
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| E. coli |
S.cerevisiae |
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| Metabolite |
Error (%) |
Metabolite |
Error (%) |
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| G6P |
5.14 × 10-1 |
Glc |
1.24 × 10-1 |
| F6P |
2.79 |
G6P |
6.35 × 10-2 |
| FDP |
1.21 |
F6P |
6.46 × 10-2 |
| DHAP |
2.16 |
FDP |
2.38 × 10-1 |
| GAP |
1.95 |
DHAP |
1.25 × 10-1 |
| PGP |
2.71 × 102 |
GAP |
1.40 × 10-1 |
| 3PG |
1.01 |
PGP |
3.36 |
| 2PG |
5.88 |
PEP |
6.88 × 10-2 |
| PEP |
8.27 × 10-1 |
Pyr |
9.45 × 10-2 |
| Pyr |
2.45 × 10-1 |
ACA |
3.91 × 10-2 |
| 6PG |
2.06 |
EtOH |
7.73 × 10-3 |
| Ribu5P |
1.04 × 10 |
Glyc |
2.11 × 10-2 |
| Xyl5P |
8.08 |
ATP |
5.67 × 10-2 |
| Sed7P |
9.06 |
ADP |
3.36 × 10-2 |
| Rib5P |
2.91 |
AMP |
1.28 × 10-1 |
| E4P |
7.40 |
NAD |
3.74 × 10-2 |
| G1P |
2.82 |
NADH |
1.18 × 10-1 |
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| MRE |
1.94 × 10 |
MRE |
2.77 × 10-1 |
Ishii et al. Theoretical Biology and Medical Modelling 2007 4:19 doi:10.1186/1742-4682-4-19 |
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