Table 1

Pan-Genomic CUF & CUB Table
Am.Acid
 Codon
 Number
 CUFi (#/1 k)
 CUFij (% of fraction)
 rCUF (% of fraction
 CUBij (%)
 |CUBij(%)|
 Am.Acid
 Codon
 Number
 CUFi (#/1 k)
 CUFij (% of fraction)
 rCUF (% of fraction
 CUBij (%)
 |CUBij(%)|
GLY
 GGG
 3598776.0
 12.5
 19.0
 25.0
 -6.0
 6.0
 Trp
 TGG
 3675912.0
 12.7
 100.0
 100.0
 0.0
 0.0
GLY
 GGA
 5477754.0
 19.0
 28.9
 25.0
 3.9
 3.9
 End
 TGA
 308407.0
 1.1
 39.9
 33.0
 6.9
 6.9
GLY
 GGT
 4451391.0
 15.4
 23.5
 25.0
 -1.5
 1.5
 Cys
 TGT
 2509240.0
 8.7
 47.2
 50.0
 -2.8
 2.8
GLY
 GGC
 5445255.0
 18.9
 28.7
 25.0
 3.7
 3.7
 Cys
 TGC
 2810369.0
 9.7
 52.8
 50.0
 2.8
 2.8
















Glu
 GAG
 9756293.0
 33.8
 51.4
 50.0
 1.4
 1.4
 End
 TAG
 183171.0
 0.6
 23.7
 33.0
 -9.3
 9.3
Glu
 GAA
 9209632.0
 31.9
 48.6
 50.0
 -1.4
 1.4
 End
 TAA
 281718.0
 1.0
 36.4
 33.0
 3.4
 3.4
Asp
 GAT
 8195141.0
 28.4
 54.9
 50.0
 4.9
 4.9
 Tyr
 TAT
 4107194.0
 14.2
 48.6
 50.0
 -1.4
 1.4
Asp
 GAC
 6731842.0
 23.3
 45.1
 50.0
 -4.9
 4.9
 Tyr
 TAC
 4337253.0
 15.0
 51.4
 50.0
 1.4
 1.4
















Val
 GTG
 6428801.0
 22.3
 35.3
 25.0
 10.3
 10.3
 Leu
 TTG
 4737403.0
 16.4
 17.5
 16.7
 0.8
 0.8
Val
 GTA
 2695055.0
 9.3
 14.8
 25.0
 -10.2
 10.2
 Leu
 TTA
 3136971.0
 10.9
 11.6
 16.7
 -5.1
 5.1
Val
 GTT
 4781792.0
 16.6
 26.3
 25.0
 1.3
 1.3
 Phe
 TTT
 5426287.0
 18.8
 48.0
 50.0
 -2.0
 2.0
Val
 GTC
 4280999.0
 14.8
 23.5
 25.0
 -1.5
 1.5
 Phe
 TAC
 5873939.0
 20.4
 52.0
 50.0
 2.0
 2.0
















Ala
 GCG
 3487704.0
 12.1
 16.8
 25.0
 -8.2
 8.2
 Ser
 TCG
 2485280.0
 8.6
 10.8
 16.7
 -5.9
 5.9
Ala
 GCA
 5031084.0
 17.4
 24.3
 25.0
 -0.7
 0.7
 Ser
 TCA
 3962926.0
 13.7
 17.2
 16.7
 0.6
 0.6
Ala
 GCT
 5779334.0
 20.0
 27.9
 25.0
 2.9
 2.9
 Ser
 TCT
 4499262.0
 15.6
 19.6
 16.7
 2.9
 2.9
Ala
 GCC
 6432441.0
 22.3
 31.0
 25.0
 6.0
 6.0
 Ser
 TCC
 4191190.0
 14.5
 18.2
 16.7
 1.6
 1.6
















Arg
 AGG
 3071603.0
 10.6
 18.9
 16.7
 2.3
 2.3
 Arg
 CGG
 2379693.0
 8.2
 14.7
 16.7
 -2.0
 2.0
Arg
 AGA
 3953550.0
 13.7
 24.4
 16.7
 7.7
 7.7
 Arg
 CGA
 1898114.0
 6.6
 11.7
 16.7
 -5.0
 5.0
Ser
 AGT
 3473736.0
 12.0
 15.1
 16.7
 -1.6
 1.6
 Arg
 CGT
 2071451.0
 7.2
 12.8
 16.7
 -3.9
 3.9
Ser
 AGC
 4391636.0
 15.2
 19.1
 16.7
 2.4
 2.4
 Arg
 CGC
 2842349.0
 9.8
 17.5
 16.7
 0.9
 0.9
















Lys
 AAG
 8869890.0
 30.7
 52.7
 50.0
 2.7
 2.7
 Gin
 CAG
 6974185.0
 24.2
 58.6
 50.0
 8.6
 8.6
Lys
 AAA
 7946577.0
 27.5
 47.3
 50.0
 -2.7
 2.7
 Gin
 CAA
 4922495.0
 17.1
 41.4
 50.0
 -8.6
 8.6
Asn
 AAT
 6514892.0
 22.6
 51.9
 50.0
 1.9
 1.9
 His
 CAT
 3408853.0
 11.8
 49.7
 50.0
 -0.3
 0.3
Asn
 AAC
 6036774.0
 20.9
 48.1
 50.0
 -1.9
 1.9
 His
 CAC
 3453004.0
 12.0
 50.3
 50.0
 0.3
 0.3
















Met
 ATG
 6909100.0
 23.9
 100.0
 100.0
 0.0
 0.0
 Leu
 CTG
 7327412.0
 25.4
 27.1
 16.7
 10.4
 10.4
Ile
 ATA
 3373624.0
 11.7
 22.2
 33.0
 -10.8
 10.8
 Leu
 CTA
 2418342.0
 8.4
 8.9
 16.7
 -7.7
 7.7
Ile
 ATT
 5925942.0
 20.5
 39.0
 33.0
 6.0
 6.0
 Leu
 CTT
 4540618.0
 15.7
 16.8
 16.7
 0.1
 0.1
Ile
 ATC
 5905801.0
 20.5
 38.8
 33.0
 5.8
 5.8
 Leu
 CTC
 4907197.0
 17.0
 18.1
 16.7
 1.5
 1.5
















Thr
 ACG
 2486009.0
 8.6
 15.9
 25.0
 -9.1
 9.1
 Pro
 CCG
 2861706.0
 9.9
 18.9
 25.0
 -6.1
 6.1
Thr
 ACA
 4473401.0
 15.5
 28.6
 25.0
 3.6
 3.6
 Pro
 CCA
 4491106.0
 15.6
 29.7
 25.0
 4.7
 4.7
Thr
 ACT
 4084032.0
 14.2
 26.1
 25.0
 1.1
 1.1
 Pro
 CCT
 4142534.0
 14.4
 27.4
 25.0
 2.4
 2.4
Thr
 ACC
 4619047.0
 16.0
 29.5
 25.0
 4.5
 4.5
 Pro
 CCC
 3615638.0
 12.5
 23.9
 25.0
 -1.1
 1.1








Summs
288600157.0
 1000.0
 2100.0
 2097.9
 2.1
 245.4














10.14% of CUBmax

Biro Theoretical Biology and Medical Modelling 2008 5:16   doi:10.1186/1742-4682-5-16