|
Positional nucleotide usage frequencies in 113 Species |
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| log(-C) |
C1+G1 |
C3+G3 |
C2+G2 |
C2+T2 |
C1+T1 |
G2+T2 |
C3+T3 |
G1+T1 |
G3+T3 |
A3+C3 |
A1+C1 |
A3+G3 |
A2+C2 |
A1+G1 |
A2+G2 |
A2+T2 |
A3+T3 |
A1+T1 |
|
|
||||||||||||||||||
| A1+T1 |
-100.0 |
-38.6 |
-38.3 |
-8.9 |
-7.4 |
-4.5 |
-3.6 |
-1.9 |
-0.5 |
0.5 |
1.9 |
3.6 |
4.5 |
7.4 |
8.9 |
38.3 |
38.6 |
100.0 |
| A3+T3 |
-38.6 |
-100.0 |
-24.9 |
-4.6 |
-6.9 |
-2.7 |
-4.0 |
-0.4 |
-2.0 |
2.0 |
0.4 |
4.0 |
2.7 |
6.9 |
4.6 |
24.9 |
100.0 |
38.6 |
| A2+T2 |
38.3 |
-24.9 |
-100.0 |
-7.1 |
-12.8 |
-2.9 |
-2.3 |
-1.1 |
-0.2 |
0.2 |
1.1 |
2.3 |
2.9 |
12.8 |
7.1 |
100.0 |
24.9 |
38.3 |
| A2+G2 |
-8.9 |
-4.6 |
-7.1 |
-100.0 |
-3.0 |
-7.1 |
-5.4 |
-11.2 |
-0.5 |
0.5 |
11.2 |
5.4 |
7.1 |
3.0 |
100.0 |
7.1 |
4.6 |
8.9 |
| A1+G1 |
-7.4 |
-6.9 |
-12.8 |
-3.0 |
-100.0 |
-0.2 |
-3.7 |
-0.2 |
-0.7 |
0.7 |
0.2 |
3.7 |
0.2 |
100.0 |
3.0 |
12.8 |
6.9 |
7.4 |
| A2+C2 |
-4.5 |
-2.7 |
-2.6 |
-7.1 |
-0.2 |
-100.0 |
-0.8 |
-2.4 |
-0.2 |
0.2 |
2.4 |
0.8 |
100.0 |
0.2 |
7.1 |
2.9 |
2.7 |
4.5 |
| A3+G3 |
-3.6 |
-4.0 |
-2.3 |
-5.4 |
-3.7 |
-0.8 |
-100.0 |
-1.3 |
-1.0 |
1.0 |
1.3 |
100.0 |
0.8 |
3.7 |
5.4 |
2.3 |
4.0 |
3.6 |
| A1+C1 |
-1.9 |
-0.4 |
-1.1 |
-11.2 |
-0.2 |
-2.4 |
-1.3 |
-100.0 |
-0.6 |
0.6 |
100.0 |
1.3 |
2.4 |
0.2 |
11 2 |
1.1 |
0.4 |
1.9 |
| A3+C3 |
-0.5 |
-2.0 |
-0.2 |
-0.5 |
-0.7 |
-0.2 |
-1.0 |
-0.6 |
-100.0 |
100.0 |
0.6 |
1.0 |
0.2 |
0.7 |
0.5 |
0.2 |
2.0 |
0.5 |
|
|
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| G3+T3 |
0.5 |
2.0 |
0.2 |
0.5 |
0.7 |
0.2 |
1.0 |
0.6 |
100.0 |
-100.0 |
-0.6 |
-1.0 |
-0.2 |
-0.7 |
-0.5 |
-0.2- |
-2.0- |
-0.5 |
| G1+T1 |
1.9 |
0.4 |
1.1 |
11.2 |
0.2 |
2.4 |
1.3 |
100.0 |
0.6 |
-0.6 |
-100.0 |
-1.3 |
-2.4 |
-0.2 |
-11.2 |
-1.1 |
-0.4 |
-1.9 |
| C3+T3 |
3.6 |
4.0 |
2.3 |
5.4 |
3.7 |
0.8 |
100.0 |
1.3 |
1.0 |
-1.0 |
-1.3 |
-100.0 |
-0.8 |
-3.7 |
-5.4 |
2.3 |
4.0 |
-3.6 |
| G2+T2 |
4.5 |
2.7 |
2.9 |
7.1 |
0.2 |
100.0 |
0.8 |
2.4 |
0.2 |
-0.2 |
-2.4 |
-0.8 |
-100.0 |
-0.2 |
-7.1 |
-2.9 |
-2.7 |
-4.5 |
| C1+T1 |
7.4 |
6.9 |
12.8 |
3.0 |
100.0 |
0.2 |
3.7 |
0.2 |
0.7 |
-0.7 |
-0.2 |
-3.7 |
-0.2 |
-100.0 |
-3.0 |
-12.8 |
-6.9 |
-7.4 |
| C2+T2 |
8.9 |
4.6 |
7.1 |
100.0 |
3.0 |
7.1 |
5.4 |
11.2 |
0.5 |
-0.5 |
-11.2 |
-5.4 |
-7.1 |
-3.0 |
-100.0 |
-7.1 |
-4.6 |
-8.9 |
| C2+G2 |
38.3 |
24.9 |
100.0 |
7.1 |
12.8 |
2.9 |
2.3 |
1.1 |
0.2 |
-0.2 |
-1.1 |
-2.3 |
-2.9 |
-12.8 |
-7.1 |
-100.0 |
-24.9 |
-38.3 |
| C3+G3 |
38.6 |
100.0 |
24.9 |
4.6 |
6.9 |
2.7 |
4.0 |
0.4 |
2.0 |
-2.0 |
-0.4 |
-4.0 |
-2.7 |
-6.9 |
-4.6 |
-24.9 |
-100.0 |
-38.6 |
| C1+G1 |
100.0 |
38.6 |
38.3 |
8.9 |
7.4 |
4.5 |
3.6 |
1.9 |
0.5 |
-0.5 |
-1.9 |
-3.6 |
-4.5 |
-7.4 |
-8.9 |
-38.3 |
-38.6 |
-100.0 |
|
C: Significance of correlation. – sign was added to negative correlations. log (-0) was regarded to be 100 | ||||||||||||||||||
Biro Theoretical Biology and Medical Modelling 2008 5:16 doi:10.1186/1742-4682-5-16 |
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