|
REase (DNase) enzymes cutting HSV-2 genome in > 100, but < 400 sites |
|
| Enzyme name |
Genomic splices (palindrome) |
|
|
|
| AccBSI |
164(gagcgg) |
| AccI |
111(gt/mkac) |
| AclWI |
225(ggatc) |
| AflIII |
127(a/crygt) |
| Alw21I |
203(gwgcw/c) |
| Alw26I |
308 (gtctc) |
| AlwI |
225 (ggatc) |
| ApaI |
267 (gggcc/c) |
| AspHI |
203 (gwgcw/c) |
| BbeI |
261 (ggcgc/c) |
| Bbv12I |
203 (gwgcw/c) |
| BsaWI |
131 (w/ccggw) |
| Bse1I |
155 (actgg) |
| BseNI |
155 (actgg) |
| BsePI |
349 (g/cgcgc) |
| BseRI |
213 (gaggag) |
| BsiHKAI |
203 (gwgcw/c) |
| BsiI |
111 (ctcgtg) |
| BsmAI |
308 (gtctc) |
| BsmBI |
149 (cgtctc) |
| Bsp120I |
267 (g/ggccc) |
| BspMI |
123 (acctgc) |
| BpmI |
170 (ctggag) |
| BsaAI |
155 (yac/gtr) |
| BsrBI |
164 (gagcgg) |
| BsrI |
155 (actgg |
| BsrSI |
155 (actgg) |
| BssHII |
349 (g/cgcgc) |
| BssSI |
111 (ctcgtg) |
| BstZI |
338 (c/ggccg) |
| BssT1I |
124 (c/cwwgg) |
| BstD102I |
164 (gagcgg) |
| BstDEI |
139 (c/tnag) |
| BstF5I |
292 (ggatg) |
| BstX2I |
108 (r/gatcy) |
| BstYI |
108 (r/gatcy) |
| Cfr9I |
286 (c/ccggg) |
| DdeI |
139 (c/tnag) |
| EagI |
338 (c/ggccg) |
| EclXI |
338 (c/ggccg) |
| Eco130I |
124(c/cwwgg) |
| EcoT14I |
124 (c/cwwgg) |
| EheI |
261 (ggc/gcc) |
| ErhI |
124 (c/cwwgg) |
| Esp3I |
149 (cgtctc) |
| FokI |
292 (ggatg) |
| HincII |
105 (gty/rac) |
| HindII |
105 (gty/rac) |
| HinfI |
318 (g/antc) |
| HphI |
280 (ggtga) |
| KasI |
261 (g/gcgcc) |
| MaeIII |
244 (/gtnac) |
| MboII |
261 (gaaga) |
| MflI |
108 (r/gatcy) |
| MroNI |
250 (g/ccggc) |
| MseI |
116 (t/taa) |
| MslI |
124(caynn/nnrtg) |
| NaeI |
250 (gcc/ggc) |
| NarI |
261 (gg/cgcc) |
| NgoAIV |
250 (g/ccggc) |
| NgoMI |
250 (g/ccggc) |
| NspI |
104 (rcatg/y) |
| PleI |
212 (gagtc) |
| PpuMI |
169 (rg/gwccy) |
| Psp5II |
169 (rg/gwccy) |
| PspAI |
286 (c/ccggg) |
| PspALI |
286 (ccc/ggg) |
| PspOMI |
267 (g/ggccc) |
| SfaNI |
279 (gcatc) |
| SmaI |
286 (ccc/ggg) |
| TfiI |
106 (g/awtc) |
| Tru1I |
116 (t/taa) |
| Tru9I |
116 (t/taa) |
| Tsp45I |
184 (/gtsac) |
| TspRI |
109 (cagtg) |
| XhoII |
108 (r/gatcy) |
| XmaI |
286 (c/ccggg) |
| XmaIII |
338 (c/ggccg) |
|
77 total enzymes | |
Wayengera et al. Theoretical Biology and Medical Modelling 2008 5:18 doi:10.1186/1742-4682-5-18 |
|