References

  1. Benecke A: Genomic plasticity and information processing by transcription coregulators.

    ComPlexUs 2003 , 1:65-76. Publisher Full Text OpenURL

  2. Benecke A: Chromatin code, local non-equilibrium dynamics, and the emergence of transcription regulatory programs.

    Eur Phys J E 2006 , 19:379-84. PubMed Abstract | Publisher Full Text OpenURL

  3. Berg J: Dynamics of gene expression and the regulatory inference problem.

    Eur Phys Lett 2008 , 82:28010. Publisher Full Text OpenURL

  4. Benecke A: Gene regulatory network inference using out of equilibrium statistical mechanics.

    HFSP J 2008 , 2(4):183-8. Publisher Full Text OpenURL

  5. Lesne A, Benecke A: Probability landscapes for integrative genomics.

    Theor Biol Med Model 2008 , 5:9. PubMed Abstract | BioMed Central Full Text | PubMed Central Full Text OpenURL

  6. Kullback S, Leibler RA: On information and sufficiency.

    Ann Math Statist 1951 , 22:79-86. Publisher Full Text OpenURL

  7. Lesne A, Noth S, Brysbaert G, Tchitchek N, Benecke A: Complementary probabilities for similarity and distinctness: application to transcriptome analysis.

    2008 , in press.

  8. Wilhelm E, Pellay FX, Benecke A, Bell B: TAF6delta controls apoptosis and gene expression in the absence of p53.

    PLoS One 2008 , 3(7):e2721. PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL

  9. Bühlmann P, Wyner AJ: Variable length Markov chains.

    Ann Statist 1999 , 7:2480-513. OpenURL

  10. Durbin R, Eddy S, Krogh A, Mitchison G: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press; 1998.

  11. Noth S, Benecke A: Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700(TM)/PANTHER(TM) probe-to-gene annotations.

    BMC Bioinformatics 2005 , 22(6):307. BioMed Central Full Text OpenURL