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Items 1 - 20 of 107
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1:

Probability landscapes for integrative genomics.

Lesne A, Benecke A.

Theor Biol Med Model. 2008 May 20;5:9.

PMID: 18492240 [PubMed - indexed for MEDLINE]

2:

Feature context-dependency and complexity-reduction in probability landscapes for integrative genomics.

Lesne A, Benecke A.

Theor Biol Med Model. 2008 Sep 10;5:21.

PMID: 18783599 [PubMed - in process]

4:

Comparative genomics tools applied to bioterrorism defence.

Slezak T, Kuczmarski T, Ott L, Torres C, Medeiros D, Smith J, Truitt B, Mulakken N, Lam M, Vitalis E, Zemla A, Zhou CE, Gardner S.

Brief Bioinform. 2003 Jun;4(2):133-49.

PMID: 12846395 [PubMed - indexed for MEDLINE]

5:

[Transcriptomes for serial analysis of gene expression]

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID: 12645300 [PubMed - indexed for MEDLINE]

6:

xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

Genome Biol. 2006;7(11):R111.

PMID: 17116260 [PubMed - indexed for MEDLINE]

7:

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID: 17062145 [PubMed - indexed for MEDLINE]

8:

CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data.

Neuweger H, Baumbach J, Albaum S, Bekel T, Dondrup M, Hüser AT, Kalinowski J, Oehm S, Pühler A, Rahmann S, Weile J, Goesmann A.

BMC Syst Biol. 2007 Nov 22;1:55.

PMID: 18034885 [PubMed - indexed for MEDLINE]

9:

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID: 17445272 [PubMed - indexed for MEDLINE]

10:

ISOL@: an Italian SOLAnaceae genomics resource.

Chiusano ML, D'Agostino N, Traini A, Licciardello C, Raimondo E, Aversano M, Frusciante L, Monti L.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S7.

PMID: 18387209 [PubMed - indexed for MEDLINE]

11:

FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.

Paschall JE, Oleksiak MF, VanWye JD, Roach JL, Whitehead JA, Wyckoff GJ, Kolell KJ, Crawford DL.

BMC Genomics. 2004 Dec 20;5(1):96.

PMID: 15610557 [PubMed - indexed for MEDLINE]

12:

Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

BMC Bioinformatics. 2006 Jan 23;7:33.

PMID: 16426464 [PubMed - indexed for MEDLINE]

13:

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

Arumugam M, Wei C, Brown RH, Brent MR.

Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

PMID: 16925839 [PubMed - indexed for MEDLINE]

14:

GOing from functional genomics to biological significance.

McCarthy FM, Bridges SM, Burgess SC.

Cytogenet Genome Res. 2007;117(1-4):278-87.

PMID: 17675869 [PubMed - indexed for MEDLINE]

15:

Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.

PMID: 15826305 [PubMed - indexed for MEDLINE]

16:

Analysis of Aspergillus nidulans metabolism at the genome-scale.

David H, Ozçelik IS, Hofmann G, Nielsen J.

BMC Genomics. 2008 Apr 11;9:163.

PMID: 18405346 [PubMed - indexed for MEDLINE]

17:

Ab initio identification of putative human transcription factor binding sites by comparative genomics.

Corà D, Herrmann C, Dieterich C, Di Cunto F, Provero P, Caselle M.

BMC Bioinformatics. 2005 May 2;6:110.

PMID: 15865625 [PubMed - indexed for MEDLINE]

18:

Prediction of genomic functional elements.

Jones SJ.

Annu Rev Genomics Hum Genet. 2006;7:315-38. Review.

PMID: 16824019 [PubMed - indexed for MEDLINE]

19:

A genome-wide 20 K citrus microarray for gene expression analysis.

Martinez-Godoy MA, Mauri N, Juarez J, Marques MC, Santiago J, Forment J, Gadea J.

BMC Genomics. 2008 Jul 3;9:318.

PMID: 18598343 [PubMed - indexed for MEDLINE]

20:

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

Kellis M, Patterson N, Birren B, Berger B, Lander ES.

J Comput Biol. 2004;11(2-3):319-55.

PMID: 15285895 [PubMed - indexed for MEDLINE]

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